SuperSAGE, its use for genome-wide expression profiling and high-throughput downstream applications is described in:

• Matsumura, H., Reich, S., Ito, A., Saitoh, H., Winter, P., Kahl, G., Reuter, M., Krueger D., Terauchi, R. SuperSAGE: A universal functional genomics tool for eukaryotes. Proc. Natl. Acad. Sci. USA 100: 15718-15723 (2003)

• Matsumura H., Reich S., Reuter M., Krueger D., Winter P., Kahl G., Terauchi R. SuperSAGE: A potent transcriptome tool for eukaryotic organisms. In: SAGE: Current Technologies and Applications (San Ming Wang, ed.), Chapter 3, pp.77-90, Horizon Scientific Press, Norwich, UK (2004)

• Matsumura, H., Ito, A., Saitoh, H., Kamoun, S., Winter, P., Kahl, G., Reuter, M., Krüger D., Terauchi, R. SuperSAGE. Technical advance. Cell. Microbiol. 7: 11-18 (2005)

• Nasir et al.: "High-throughput in planta expression screening identifies a class II ethylene-responsive element binding factor-like protein that regulates plant cell death and non-host resistance" Plant J. 43:491-505 (2005)

• Matsumura, H., Nasir, K.H.B., Yoshida K., Ito, A., Kahl, G., Krüger D.H., Terauchi, R. (2006) SuperSAGE-array: The direct use of 26-base-pair transcript tags in oligonucleotide arrays. Nature Methods 3: 469-474 (2006)

• Matsumura H., Reuter M., Krüger D.H., Winter P., Kahl G., Terauchi R. SuperSAGE. In: Methods in Molecular Biology Vol. 387:” Serial Analysis of Gene Expression: Digital Gene Expression Profiling”. Ed. K. L. Nielsen, Humana Press Inc., Totowa, NJ, USA (2007)